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1

Expansion of circulating T cells resembling follicular helper T cells is a fixed phenotype that identifies a subset of severe systemic lupus erythematosus

Nicholas Simpson, Paul A. Gatenby, Anastasia Wilson, Shreya Malik, David A. Fulcher, Stuart G. Tangye, Harinder Manku, Timothy J. Vyse, Giovanna Roncador, Gavin A. Huttley, Christopher C. Goodnow, Car

Journal:

Arthritis & Rheumatism

Year:

2010

Language:

english

File:

PDF, 785 KB

english, 2010

2

Vestige: Maximum likelihood phylogenetic footprinting

Matthew J Wakefield, Peter Maxwell, Gavin A Huttley

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 381 KB

english, 2005

3

Lake Mungo 3: A response to recent critiques

Adcock, Gregory J., Dennis, Elizabeth S., Easteal, Simon, Huttley, Gavin A., Jermiin, Lars S., Peacock, W. James, Thorne, Alan

Journal:

Archaeology in Oceania

Year:

2001

Language:

english

File:

PDF, 717 KB

english, 2001

4

Lake Mungo 3: A Response to Recent Critiques

Gregory J. Adcock, Elizabeth S. Dennis, Simon Easteal, Gavin A. Huttley, Lars S. Jermiin, W. James Peacock and Alan Thorne

Journal:

Archaeology in Oceania

Year:

2001

Language:

english

File:

PDF, 1004 KB

english, 2001

5

The “Naked Coral” Hypothesis Revisited – Evidence for and Against Scleractinian Monophyly

Kitahara, Marcelo V., Lin, Mei-Fang, Forêt, Sylvain, Huttley, Gavin, Miller, David J., Chen, Chaolun Allen, Roberts, John Murray

Journal:

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

6

Did aculeate silk evolve as an antifouling material?

Sutherland, Tara D., Sriskantha, Alagacone, Rapson, Trevor D., Kaehler, Benjamin D., Huttley, Gavin A., Blank, Kerstin G.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

7

Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages

Ying, Hua, Cooke, Ira, Sprungala, Susanne, Wang, Weiwen, Hayward, David C., Tang, Yurong, Huttley, Gavin, Ball, Eldon E., Forêt, Sylvain, Miller, David J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.61 MB

english, 2018

8

Machine Learning Techniques for Classifying the Mutagenic Origins of Point Mutations

Zhu, Yicheng, Ong, Cheng Soon, Huttley, Gavin A.

Journal:

Year:

2020

File:

PDF, 1.45 MB

2020

9

Association of polymorphisms of the estrogen receptor gene with anxiety-related traits in children and adolescents: A longitudinal study

Zoë Prichard, Anthony F. Jorm, Margot Prior, Ann Sanson, Diana Smart, Yafei Zhang, Gavin Huttley, Simon Easteal

Journal:

American Journal of Medical Genetics Part A

Year:

2002

Language:

english

File:

PDF, 101 KB

english, 2002

10

Statistical methods for detecting periodic fragments in DNA sequence data

Julien Epps, Hua Ying, Gavin A Huttley

Journal:

Year:

2011

Language:

english

File:

PDF, 479 KB

english, 2011

11

Molecular evolutionary characterization of anActivator (Ac)-like transposable element sequence from pearl millet(Pennisetum glaucum) (Poaceae)

Amy F. MacRae, Gavin A. Huttley, Michael T. Clegg

Journal:

Year:

1994

Language:

english

File:

PDF, 1.11 MB

english, 1994

12

Regional Context in the Alignment of Biological Sequence Pairs

Raymond Sammut, Gavin Huttley

Journal:

Journal of Molecular Evolution

Year:

2011

Language:

english

File:

PDF, 582 KB

english, 2011

13

COMPUTATIONAL GENETICS AND GENOMICS: TOOLS FOR UNDERSTANDING DISEASE

Journal:

Immunology & Cell Biology

Year:

2006

Language:

english

File:

PDF, 25 KB

english, 2006

14

Genetic Diversity in the Common Morning Glory

DEBORAH GLOVER, MARY L. DURBIN, GAVIN HUTTLEY, MICHAEL T. CLEGG

Journal:

Plant Species Biology

Year:

1996

File:

PDF, 2.07 MB

1996

15

10.1038/78092

Huttley, Gavin A., Easteal, Simon, Southey, Melissa C., Tesoriero, Andrea, Giles, Graham G., McCredie, Margaret R.E., Hopper, John L., Venter, Deon J.

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 102 KB

english, 2000

16

Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans

MacArthur, Daniel G, Seto, Jane T, Raftery, Joanna M, Quinlan, Kate G, Huttley, Gavin A, Hook, Jeff W, Lemckert, Frances A, Kee, Anthony J, Edwards, Michael R, Berman, Yemima

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 325 KB

english, 2007

17

CCR2 chemokine receptor and AIDS progression

Smith, Michael W., Carrington, Mary, Winkler, Cheryl, Lomb, Deborah, Dean, Michael, Huttley, Gavin, O'brien, Stephen

Journal:

Nature Medicine

Year:

1997

File:

PDF, 224 KB

1997

18

Pathological rate matrices: from primates to pathogens

Harold W Schranz, Von Bing Yap, Simon Easteal, Rob Knight, Gavin A Huttley

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 595 KB

english, 2008

19

Comparison of methods for estimating the nucleotide substitution matrix

Maribeth Oscamou, Daniel McDonald, Von Bing Yap, Gavin A Huttley, Manuel E Lladser, Rob Knight

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 415 KB

english, 2008

20

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics

J Gregory Caporaso, Sandra Smit, Brett C Easton, Lawrence Hunter, Gavin A Huttley, Rob Knight

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 2.00 MB

english, 2008

21

Dynamic evolution of venom proteins in squamate reptiles

Casewell, Nicholas R., Huttley, Gavin A., Wüster, Wolfgang

Journal:

Nature Communications

Year:

2012

Language:

english

File:

PDF, 1.06 MB

english, 2012

22

The human melanocortin-1 receptor locus: analysis of transcription unit, locus polymorphism and haplotype evolution

Aaron G. Smith, Neil F. Box, Lisa H. Marks, Wei Chen, Darren J. Smit, Jason R. Wyeth, Gavin A. Huttley, Simon Easteal, Richard A. Sturm

Journal:

Year:

2001

Language:

english

File:

PDF, 517 KB

english, 2001

23

Dating the Origin of the CCR5-Δ32 AIDS-Resistance Allele by the Coalescence of Haplotypes

J. Claiborne Stephens, David E. Reich, David B. Goldstein, Hyoung Doo Shin, Michael W. Smith, Mary Carrington, Cheryl Winkler, Gavin A. Huttley, Rando Allikmets, Lynn Schriml, Bernard Gerrard, Michael

Journal:

The American Journal of Human Genetics

Year:

1998

Language:

english

File:

PDF, 272 KB

english, 1998

24

Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics

Nekrasov, Maxim, Amrichova, Jana, Parker, Brian J, Soboleva, Tatiana A, Jack, Cameron, Williams, Rohan, Huttley, Gavin A, Tremethick, David J

Journal:

Nature Structural and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.72 MB

english, 2012

25

CCR5-Δ32 gene deletion in HIV-1 infected patients

Michael W Smith, Michael Dean, Mary Carrington, Gavin A Huttley, Stephen J O'Brien

Journal:

Year:

1997

Language:

english

File:

PDF, 50 KB

english, 1997

26

PyEvolve: a toolkit for statistical modelling of molecular evolution

Andrew Butterfield, Vivek Vedagiri, Edward Lang, Cath Lawrence, Matthew J Wakefield, Alexander Isaev, Gavin A Huttley

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 332 KB

english, 2004

27

Pitfalls of the most commonly used models of context dependent substitution

Helen Lindsay, Von Bing Yap, Hua Ying, Gavin A Huttley

Journal:

Year:

2008

Language:

english

File:

PDF, 1.66 MB

english, 2008

28

Pitfalls of the most commonly used models of context dependent substitution

Helen Lindsay, Von Bing Yap, Hua Ying, Gavin A Huttley

Journal:

Year:

2009

Language:

english

File:

PDF, 84 KB

english, 2009

29

A unique H2A histone variant occupies the transcriptional start site of active genes

Soboleva, Tatiana A, Nekrasov, Maxim, Pahwa, Anuj, Williams, Rohan, Huttley, Gavin A, Tremethick, David J

Journal:

Nature Structural and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

30

[IEEE 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Washington, DC, USA (2012.12.2-2012.12.4)] Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - A comparison of periodicity profile methods for sequence analysis

Bellani, Manas, Epps, Julien, Huttley, Gavin A.

Year:

2012

Language:

english

File:

PDF, 294 KB

english, 2012

31

Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins

Maitip, Jakkrawut, Trueman, Holly E., Kaehler, Benjamin D., Huttley, Gavin A., Chantawannakul, Panuwan, Sutherland, Tara D.

Journal:

Insect Biochemistry and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 3.92 MB

english, 2015

32

Evolution of the Chalcone Synthase Gene Family in the Genus Ipomoea

Mary L. Durbin, Gerald H. Learn, Jr., Gavin A. Huttley and Michael T. Clegg

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 291 KB

english, 1995

33

Modelling and bioinformatics studies of the human Kappa-class glutathione transferase predict a novel third glutathione transferase family with similarity to prokaryotic 2-hydroxychromene-2-carboxylate isomerases

ROBINSON, Anna, HUTTLEY, Gavin A., BOOTH, Hilary S., BOARD, Philip G.

Journal:

Biochemical Journal

Year:

2004

Language:

english

File:

PDF, 365 KB

english, 2004

34

Statistical Methods for Identifying Sequence Motifs Affecting Point Mutations

Zhu, Yicheng, Neeman, Teresa, Yap, Von Bing, Huttley, Gavin A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.02 MB

english, 2017

35

Standard Codon Substitution Models Overestimate Purifying Selection for Non-Stationary Data

Kaehler, Benjamin D., Bing Yap, Von, Huttley, Gavin A.

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 4.59 MB

english, 2017

36

Infection with a Virulent Strain of Wolbachia Disrupts Genome Wide-Patterns of Cytosine Methylation in the Mosquito Aedes aegypti

Ye, Yixin H., Woolfit, Megan, Huttley, Gavin A., Rancès, Edwige, Caragata, Eric P., Popovici, Jean, O'Neill, Scott L., McGraw, Elizabeth A., Bourtzis, Kostas

Journal:

Year:

2013

Language:

english

File:

PDF, 525 KB

english, 2013

37

The Embedding Problem for Markov Models of Nucleotide Substitution

Verbyla, Klara L., Yap, Von Bing, Pahwa, Anuj, Shao, Yunli, Huttley, Gavin A., Scheffler, Konrad

Journal:

Year:

2013

Language:

english

File:

PDF, 501 KB

english, 2013

38

Transcriptome Sequencing of Two Phenotypic Mosaic Eucalyptus Trees Reveals Large Scale Transcriptome Re-Modelling

Padovan, Amanda, Patel, Hardip R., Chuah, Aaron, Huttley, Gavin A., Krause, Sandra T., Degenhardt, Jörg, Foley, William J., Külheim, Carsten, Gibas, Cynthia

Journal:

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

39

Whole Exome Sequencing of Extreme Morbid Obesity Patients: Translational Implications for Obesity and Related Disorders

Paz-Filho, Gilberto, Boguszewski, Margaret, Mastronardi, Claudio, Patel, Hardip, Johar, Angad, Chuah, Aaron, Huttley, Gavin, Boguszewski, Cesar, Wong, Ma-Li, Arcos-Burgos, Mauricio, Licinio, Julio

Journal:

Year:

2014

Language:

english

File:

PDF, 543 KB

english, 2014

40

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Bokulich, Nicholas A., Kaehler, Benjamin D., Rideout, Jai Ram, Dillon, Matthew, Bolyen, Evan, Knight, Rob, Huttley, Gavin A., Gregory Caporaso, J.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

41

redbiom: a Rapid Sample Discovery and Feature Characterization System

McDonald, Daniel, Kaehler, Benjamin, Gonzalez, Antonio, DeReus, Jeff, Ackermann, Gail, Marotz, Clarisse, Huttley, Gavin, Knight, Rob, Chu, Haiyan

Journal:

Year:

2019

Language:

english

File:

PDF, 1.19 MB

english, 2019

42

Species abundance information improves sequence taxonomy classification accuracy

Kaehler, Benjamin D., Bokulich, Nicholas A., McDonald, Daniel, Knight, Rob, Caporaso, J. Gregory, Huttley, Gavin A.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 833 KB

english, 2019

43

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

Su, Xiaoquan, Jing, Gongchao, Sun, Zheng, Liu, Lu, Xu, Zhenjiang, McDonald, Daniel, Wang, Zengbin, Wang, Honglei, Gonzalez, Antonio, Zhang, Yufeng, Huang, Shi, Huttley, Gavin, Knight, Rob, Xu, Jian, B

Journal:

Year:

2020

File:

PDF, 1.59 MB

2020

44

Quantifying Influences on Intragenomic Mutation Rate

Simon, Helmut, Huttley, Gavin

Journal:

G3 Genes|Genome|Genetics

Year:

2020

File:

PDF, 1.53 MB

2020